All right. Thank you for your help!
Hi,
I understand that going into the Codeless Builder on the individual pages will bring up that shortcode since it’s going to the Codeless Builder. However, that is also the case when I go to the WordPress customize screen (from Apperance > Customize in the WordPress admin menu) like so:

If I go in and make a change to one of the theme options, like changing the logo in the header, after I save the change that shortcode is being added to the home page. Is there anything I can do to keep that Codeless Builder shortcode from being added after I save my changes through the customize screen?
I also noticed that after updating to WordPress 4.9 that when going to the customize screen that the Codeless Builder message that shows up as the customize options are being loaded just kept on spinning and would not load the customization options. Here’s a screenshot of the screen I’m referring to:

I had to revert back to WordPress 4.8.3 to get it working correctly again.